Reference Tables

Suggested Treatment Options by Condition [Companion]

(C/S = culture and susceptibility testing)

Cardiovascular Diseases

Condition Targeted Organisms First Line Alternative Treatment Notes
Bacteremia
  • Streptococcus canis,
  • Staphylococcus spp. (aureus, pseudintermedius, schleferi),
  • Escherichia coli,
  • Enterococcus spp.
  • Actinomyces spp.
  • Rickettsia spp.
  • Anaplasma spp.
  • Mycoplasma spp.
(Ampicillin or Clindamycin) + Amikacin (Ampicillin or Clindamycin) + Fluoroquinolone C/S should guide treatment; add metronidazole if anaerobic component suspected.
Infectious Endocarditis
  • Streptococcus canis
  • Staphylococcus spp. (aureus, schleiferi, pseudintermedius, lugdunensis)
  • Escherichia coli
  • Enterococcus spp.
  • Pasteurella spp.
  • Acinetobacter baumannii
  • Bartonella spp.
Ampicillin + Amikacin Ampicillin + Fluoroquinolone C/S should guide treatment.

Critical Care Conditions

Condition Targeted Organisms First Line Alternative Treatment Notes
Peritonitis
  • Clostridium spp.
  • Escherichia coli
  • Mycobacterium microti
  • Enterococcus spp.
  • Pasteurella multocida
(Ampicillin or Clindamycin) + Fluoroquinolone (Ampicillin or Clindamycin) + Amikacin C/S should guide treatment; add metronidazole if anaerobic component suspected.
Sepsis
  • Streptococcus canis
  • Staphylococcus spp. (aureus, pseudintermedius, schleferi)
  • Escherichia coli
  • Enterococcus spp.
  • Actinomyces spp.
  • Rickettsia spp.
  • Anaplasma spp.
  • Mycoplasma spp.
(Ampicillin or Clindamycin) + Fluoroquinolone (Ampicillin or Clindamycin) + Amikacin C/S should guide treatment; add metronidazole if anaerobic component suspected.

Gastrointestinal Diseases

Condition Targeted Organisms First Line Alternative Treatment Notes
Anal Sacculitis Amoxicillin-Clavulanic Acid Used in conjunction with lavage and local treatment.
Bacterial Enteritis
  • Campylobacter spp.
  • Salmonella enterica
  • Clostridium spp. (difficile, perfringens)
  • Salmonella spp.
(See note) Choose treatment based on most likely or culture-confirmed organism (e.g. enrofloxacin for salmonellosis, metronidazole for Clostridium species, etc.).
Cholangitis / Cholangiohepatitis Beta-Lactam + Enrofloxacin Beta-Lactam + Amikacin Choice of beta-lactam should be guided by C/S.
Hemorrhagic Gastroenteritis
  • Anaerobiospirillum spp.
  • Clostridium perfringens
Metronidazole
Hepatic Encephalopathy Metronidazole
Periodontitis, Gingivitis, etc. Clindamycin Amoxicillin-Clavulanic Acid Used in conjunction with dental cleaning.

Nervous System Diseases

Condition Targeted Organisms First Line Alternative Treatment Notes
Discospondylitis Amoxicillin-Clavulanic Acid or Cephalexin Enrofloxacin C/S should guide treatment.
Meningitis Chloramphenicol or Doxycycline Trimethoprim-Sulfa Add metronidazole if anaerobic component suspected.

Ocular Diseases

Condition Targeted Organisms First Line Alternative Treatment Notes
Bacterial Conjunctivitis
  • Chlamydophila spp.
  • Corynebacterium spp.
  • Mycoplasma spp.
Doxycycline May need to be used in conjunction with an antiviral agent (e.g. famciclovir) esp. in cats.
Corneal Ulcer
  • Pseudomonas aeruginosa
  • Streptococcus canis
  • Staphylococcus spp. (pseudintermedius, aureus, schleiferi)
Neomycin-Polymyxin-Bacitracin Topical treatment.

Orthopedic Infections

Condition Targeted Organisms First Line Alternative Treatment Notes
Osteomyelitis
  • Enterococcus spp.
Clindamycin Enrofloxacin or Amikacin C/S should guide treatment; if possible, withhold treatment until results return; use in conjunction with surgical debridement.
Septic Arthritis
  • Streptococcus pyogenes
  • Staphylococcus aureus
  • Pasteurella spp.
  • Klebsiella spp.
  • Escherichia coli
  • Chlamydophila spp.
  • Borrelia burgdorferi
Amoxicillin-Clavulanic Acid or Cephalexin Doxycycline (see note) C/S should guide treatment; doxycycline recommended for suspected vector-borne bacterial polyarthritis.

Prophylaxis

Condition Targeted Organisms First Line Alternative Treatment Notes
Clean Surgery
(Not indicated)
Contaminated or Colorectal Surgery (Cefazolin or Ampicillin-Sulbactam) ± Metronidazole

Respiratory Tract Diseases – Lower Respiratory Tract

Condition Targeted Organisms First Line Alternative Treatment Notes
Bacterial pneumonia (incl. aspiration)
  • Escherichia coli
  • Streptococcus canis
  • Pasteurella multocida
  • Pseudomonas aeruginosa
  • Staphylococcus aureus
  • Streptococcus equi sub zooepidemicus
  • Bordetella bronchiseptica
Ampicillin or Ampicillin-Sulbactam (Enrofloxacin or Pradofloxacin) + Clindamycin Clindamycin not an appropriate choice if there is a suspected anaerobic component.

If Enterobacterales (e.g. E. coli, Enterobacter spp, Proteus spp, Klebsiella spp are suspected use the alternative treatment while waiting for culture results.

Bacterial Pneumonia – suspected Mycoplasma Doxycycline or Azithromycin Oxytetracycline
Pyothorax
  • Fusobacterium spp.
  • Escherichia coli
  • Nocardia spp.
  • Bacteroides spp.
  • Actinomyces viscosus
  • Streptococcus spp.
  • Staphylococcus spp.
  • Clostridium spp.
  • Mycoplasma spp.
  • Klebsiella spp.
  • Pasteurella spp.
  • Streptococcus spp.
Ampicillin-Sulbactam ± Fluoroquinolone Ampicillin or Clindamycin Drainage ± lavage recommended in combination with antimicrobial therapy.
Tracheobronchitis
  • Bordetella bronchiseptica
  • Streptococcus equi sub zooepidemicus
  • Pseudomonas spp.
Not Indicated Amoxicillin-Clavulanic Acid or Doxycycline Infectious canine tracheobronchitis is more often associated with viral agents than bacteria; antimicrobial therapy is indicated for cases with culture-confirmed secondary bacterial infection.

Respiratory Tract Diseases – Upper Respiratory Tract

Condition Targeted Organisms First Line Alternative Treatment Notes
Feline Upper Respiratory Tract Disease
  • Usually viral
  • Chlamydia spp.
  • Bordetella spp.
Doxycycline Amoxicillin-Clavulanic Acid
Rhinitis or Sinusitis
  • Bordetella bronchiseptica
  • Mycoplasma spp.
Not indicated if primary rhinitis/sinusitis Doxycycline or Amoxicillin-Clavulanic Acid for secondary rhinitis/sinusitis
C/S is of limited use because of commensal nasopharyngeal flora.

Skin and Ear Infections

Condition Targeted Organisms First Line Alternative Treatment Notes
Otitis Externa
  • Pseudomonas aeruginosa
  • Staphylococcus spp. (aureus, pseudintermedius)
  • Pasteurella spp.
  • Escherichia coli
  • Klebsiella spp.
  • Corynebacterium spp.
  • Proteus spp.
(see note) Topical treatment recommended over systemic treatment except in cases of chronic or recurrent infection; initially choose cephalexin or enrofloxacin based on ear cytology.
Otitis Media/Interna
  • Pseudomonas aeruginosa
  • Staphylococcus spp. (aureus, pseudintermedius)
  • Pasteurella spp.
  • Escherichia coli
  • Klebsiella spp.
  • Corynebacterium spp.
  • Proteus spp.
(see note) Topical or surgical treatment often recommended over systemic treatment; in cases where systemic treatment is warranted, initially choose cephalexin or enrofloxacin based on ear cytology.
Pyoderma (surface; e.g. fold pyoderma)
  • Staphylococcus spp. (aureus, pseudintermedius)
  • Pseudomonas spp.
Not Indicated (see note) Topical treatment is sufficient.
Pyoderma (superficial; e.g. folliculitis)
  • Staphylococcus spp. (pseudintermedius, schleiferi, aureus, coagulans)
  • Pseudomonas aeruginosa
  • Pasteurella spp.
Cephalexin or Clindamycin or Amoxicillin-Clavulanic Acid Empirical, unless recurrent then choose based on culture/susceptibility
Pyoderma (deep; e.g. furunculosis)
  • Staphylococcus spp. (aureus, pseudintermedius, schleiferi, coagulans)
  • Pasteurella spp.
  • Pseudomona spp.
Cephalexin or Clindamycin Choose based on culture/susceptibility C/S should guide treatment; enrofloxacin is an acceptable empiric choice when there is high index of suspicion for Pseudomonas aeruginosa (e.g. groomer-associated deep pyoderma).

Urogenital Diseases

Condition Targeted Organisms First Line Alternative Treatment Notes
Leptospirosis (suspected or confirmed)
Doxycycline
Lower Urinary Tract Infection
  • Escherichia coli
  • Klebsiella spp.
  • Proteus spp.
  • Enterococcus spp.
  • Enterobacter spp.
  • Pseudomonas aeruginosa
  • Streptococcus spp.
Amoxicillin Trimethoprim-Sulfa Enrofloxacin or pradofloxacin are suitable therapeutic options where there is documented resistance to amoxicillin or trimethoprim-sulfa (or contraindication to use of sulfa drugs).
Mastitis
  • Escherichia coli
  • Staphylocccus spp.
  • Streptococcus spp.
Amoxicillin-Clavulanic Acid Chloramphenicol Chloramphenicol should only be used if it is possible to wean puppies/kittens from the mother.
Prostatitis
  • Escherichia coli
Enrofloxacin Trimethoprim-Sulfa
Pyelonephritis (Upper Urinary Tract Infection)
  • Escherichia coli
  • Leptospira spp.
  • Staphylococcus spp.
  • Enterococcus spp.
  • Streptococcus spp.
Cefpodoxime

or

Enrofloxacin

 

 

Cefotaxime

or

Ceftazidime

Pyometra
  • Escherichia coli
  • Streptococcus canis
Amoxicillin-Clavulanic Acid + Enrofloxacin Amoxicillin-Clavulanic Acid + Aminoglycoside Ideally used in conjunction with ovario-hysterectomy surgery; also applicable to metritis.
Struvite Urolithiasis
  • Staphylococcus spp.
  • Proteus spp.
Amoxicillin-Clavulanic Acid Trimethoprim-Sulfa

Wounds and Abscesses

Condition Targeted Organisms First Line Alternative Treatment Notes
Dog Bite or Traumatic Wound (new)
  • Pasteurella spp.
  • Streptococcus spp.
  • Staphylococcus spp
  • Corynebacterium spp.
  • Fusobacterium spp.
  • Bacteroides spp.
  • Actinomyces spp.
Amoxicillin-Clavulanic Acid Amoxicillin-Clavulanic Acid + Aminoglycoside
Dog Bite or Traumatic Wound (previously treated) (See note) Prior treatment increases likelihood of resistance; C/S should guide treatment.
Feline Bite Wound/Abscess
  • Pasteurella multocida
  • Streptococcus spp.
  • Corynebacterium spp.
  • Enterococcus spp
  • Porphyromonas spp.
Amoxicillin-Clavulanic Acid Pradofloxacin (cats only)
Surgical Site Infection Cephalexin or Clindamycin C/S should guide treatment.

 

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